Stem-loop mtr-MIR2592d

Accession

MI0011817

Description

Medicago truncatula mtr-MIR2592d precursor miRNA

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592d
(2 sentences)

Sequence

agguaauucaaacuugucaaaCAACAGGACUCAAGCAUUUCGCaagcgccucauguuucuccuuugaaaauauuaaauuuuuguuaugcugguuuagaugaagguauuaagugucaaggauugaaccucaauucgguggcacuugaguaccaucaucuaaagcaagccucacaaaaauuuauuauuuucaaagggaaaacaugagguguuuggcgAAAUGCUUGAGUCCUGUUGUUuugcagguuugaauuuauc
.((((((((((((((((.((((((((((((((((((((((((((((((((((((((((.(((((((((((((.(((((((((((...((((.(((((((((.((((((((((((((.(((((((...)))))))..)))))))))).)))).))))))))).).)))...))))))))))).))))))))))))).))))))))))))))).))))))))))))))))))))))))).))))))))))).)))))

Structure

a     -           c                         -               c             u           uau   - g         a    -          -a       a 
 gguaa uucaaacuugu aaaCAACAGGACUCAAGCAUUUCGC aagcgccucauguuu uccuuugaaaaua uaaauuuuugu   gcu g uuuagauga ggua uuaaguguca  ggauuga  
 ||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||   ||| | ||||||||| |||| ||||||||||  ||||||| c
 cuauu aaguuuggacg uUUGUUGUCCUGAGUUCGUAAAgcg uuuguggaguacaaa gggaaacuuuuau auuuaaaaaca   cga c aaaucuacu ccau aguucacggu  cuuaacu  
-     u           u                         g               a             u           cuc   a g         a    g          gg       c 

Annotation confidence Not enough data

Genome context

chr3: 29660782-29661036 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2592d

Mature mtr-miR2592d-3p

• Accession: MIMAT0013270
• Description: Medicago truncatula mtr-miR2592d-3p mature miRNA
• Sequence: 216 - AAAUGCUUGAGUCCUGUUGUU - 236
• Evidence: experimental ; 454 [1], Illumina [2]

Mature mtr-miR2592d-5p

• Accession: MIMAT0020941
• Description: Medicago truncatula mtr-miR2592d-5p mature miRNA
• Sequence: 22 - CAACAGGACUCAAGCAUUUCGC - 43
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796


2. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010