Stem-loop mtr-MIR2592e

Accession

MI0011818

Description

Medicago truncatula mtr-MIR2592e precursor miRNA

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592e
(2 sentences)

Sequence

ugggauaaauucaaaccugcaaaaCAACAGGACUCAAGCAUUUCGCcaaacaccucauguuuucccuuugaaaauaauaaauuuuugugaggcuugcuuuagaugaugguacucaagugccaccgaauugagguucaauccuugacacuuaauaccuucaucuaaaccagcauaacaaaaauuuaauauuuucaaaggagaaacaugaggcgcuugcgAAAUGCUUGAGUCCUGUUGUUugacaaguuugaauuaccu
.(((...(((((((((.((..(((((((((((((((((((((((((.((.(.(((((((((((.((((((((((((.(((((((((((...(((.(.(((((((((.((((...(((((.((..((.((((...))))))..)).)))))..)))).)))))))))).)))...))))))))))).)))))))))))).))))))))))).).)))))))))))))))))))))))))))..)).))))))))).)))

Structure

u   aua         c  ca                         c  a a           c            a           gag   u c         u    cuc     c  cc  a    g 
 ggg   aauucaaac ug  aaaCAACAGGACUCAAGCAUUUCGC aa c ccucauguuuu ccuuugaaaaua uaaauuuuugu   gcu g uuuagauga ggua   aagug ca  ga uuga  
 |||   ||||||||| ||  ||||||||||||||||||||||||| || | ||||||||||| |||||||||||| |||||||||||   ||| | ||||||||| ||||   ||||| ||  || |||| g
 ucc   uuaaguuug ac  uUUGUUGUCCUGAGUUCGUAAAgcg uu g ggaguacaaag ggaaacuuuuau auuuaaaaaca   cga c aaaucuacu ccau   uucac gu  cu aacu  
-   --a         a  ag                         -  c c           a            a           aua   c -         u    -aa     a  uc  -    u 

Annotation confidence Not enough data

Genome context

chr3: 29660779-29661036 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2592e

Mature mtr-miR2592e-3p

• Accession: MIMAT0013271
• Description: Medicago truncatula mtr-miR2592e-3p mature miRNA
• Sequence: 219 - AAAUGCUUGAGUCCUGUUGUU - 239
• Evidence: experimental ; 454 [1], Illumina [2]

Mature mtr-miR2592e-5p

• Accession: MIMAT0020942
• Description: Medicago truncatula mtr-miR2592e-5p mature miRNA
• Sequence: 25 - CAACAGGACUCAAGCAUUUCGC - 46
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796


2. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010