Stem-loop mtr-MIR2592p

Accession

MI0011823

Description

Medicago truncatula mtr-MIR2592p precursor miRNA

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592p
(2 sentences)

Sequence

gggcuaauucaaacuugucaaacaacaggacucaagcauuucgcaagcgccucauguuucuccuuugaaaguauuaaauuuuuguuaugcugguuuagaugaauguauuaagugucaaggauugaaccucaauucgguggcacuugaauaccaucauccaaagcuagccucacagaaauuuauuauuuucaaagggaaaacaugagguguuuggcgAAAUGCUUGAGUCCUGUUGUUuugcagguuugaauuuauc
.....(((((((((((((.((((((((((((((((((((((((((((((((((((((((.(((((((((((((.(((((((((((...((((((((.(((((..(((((((((((((.(((((((...)))))))..))))))))).))))..)))))..))))))))...))))))))))).))))))))))))).))))))))))))))).))))))))))))))))))))))))).)))))))))))))....

Structure

gggcu             c                         -               c             u           uau        -a     au    -         -a       a 
     aauucaaacuugu aaacaacaggacucaagcauuucgc aagcgccucauguuu uccuuugaaagua uaaauuuuugu   gcugguuu  gauga  guau uaaguguca  ggauuga  
     ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||   ||||||||  |||||  |||| |||||||||  ||||||| c
     uuaaguuuggacg uUUGUUGUCCUGAGUUCGUAAAgcg uuuguggaguacaaa gggaaacuuuuau auuuaaagaca   cgaucgaa  cuacu  caua guucacggu  cuuaacu  
-cuau             u                         g               a             u           cuc        ac     ac    a         gg       c 

Annotation confidence Not enough data

Genome context

chr4: 47247439-47247694 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2592p

Mature mtr-miR2592p

• Accession: MIMAT0013276
• Description: Medicago truncatula mtr-miR2592p mature miRNA
• Sequence: 217 - AAAUGCUUGAGUCCUGUUGUU - 237
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796