Stem-loop mtr-MIR2609a

Accession

MI0011862

Description

Medicago truncatula mtr-MIR2609a precursor miRNA

Gene family

MIPF0000864; MIR2609

Sequence

ggccuuccauuggcuuUGGAAGUAAUAGGUUCUCACUuguuuggcaaaaguuuagauguauggaaaucuucauuagauaaauaugaaagaguucuucacaaagagauucaugaaauucuuaaaguuagcuaugaugauuuggaugaugaucagaaggguauuuuucuugacaucgcuuguuucuucaauucuuaugaaaugagcuaugccaaagaauugcuauaccuacaugguuuuagugcugaaaauggaauuca
....((((((((((.((((((.((.(((((...((.((.(((((((..(((((...(((..((((.(((((((.........))).)))).))))..)))...)))))......((((.....((((....)))).....))))((((.((((((((....))))).)))))))(((((((((............)))))))))..))))))).)).))....)))))..)).)))))).)))...)))))))....

Structure

ggcc       ---   u      G  -A     -UCU  C  g       ------------------------------------------------------------------------------------------------aa     aga   au    a    -   uag 
    uuccauu   ggc uUGGAA UA  UAGGU    CA Uu uuuggca                                                                                                  aguuu   ugu  ggaa ucuu cau   a
    |||||||   ||| |||||| ||  |||||    || || |||||||                                                                                                  |||||   |||  |||| |||| |||   u
    aagguaa   ucg gauuuu gu  aucca    gu aa aaaccgu                                                                                                  uuaga   aca  ucuu agaa gua   a
acuu       aag   u      g  ac     uauc  u  g       aucgaguaaaguauucuuaacuucuuuguucgcuacaguucuuuuuaugggaagacuaguaguagguuuaguaguaucgauugaaauucuuaaaguac     gaa   cu    g    a   uaa 

Annotation confidence Not enough data

Genome context

chr2: 14996815-14997071 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2609a

Mature mtr-miR2609a

• Accession: MIMAT0013315
• Description: Medicago truncatula mtr-miR2609a mature miRNA
• Sequence: 17 - UGGAAGUAAUAGGUUCUCACU - 37
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796