miRBase entry: mtr-MIR2610b

Stem-loop mtr-MIR2610b


Accession
MI0011866
Description
Medicago truncatula mtr-MIR2610b precursor miRNA
Gene family
MIPF0000988; MIR2610

Literature search
1 open access papers mention mtr-MIR2610b
(1 sentences)

Sequence

aAGAUUGAGACUUGUAUGGCUUcguugaaggaugcccggagaguaauucaggaaggcaaaaccgaaggcuggggucagcuaguggaguugccagaaaacaagcguaaggagggaauugguuuccuugacaguaagccugggauguucgacccuaccagagguucuuuccacagugcugguuucauucaugauucaccagagaccaaugcaauuuuagaugaugcaccuggaggagugacaccggucuuugugacgccuggaggagcuugcugcaacuggauugcuguugacauuccuucugugacacccugcucuaaguaauguguuugucuuguuuuuuguuguuuuuuguuuuuaagaaaacuccuuuaguucugcccaaggcgaaagugaaaucauguagggcuuuguu
.................(((....((((((((..((.(((......))).))..(((((..(((..(((((....)))))..)))..)))))((((((((((((...(((((((((((((.((((((.(((((((((((((........)))..((((..((......(((((.((((((.((((((........((((.(.....((((.((......)))))))))))..)))))).))))))..)))))))..)))).)).)))))))))))..)))..)))).....)))))))))..(((((..((((...))))..))))))).))))))))))...(((((((.......)))))))))))))))....)))((((((....(((....))).....))))))..

Structure
----------------aAGAUUGAGACUUGUAU   UUcg        ugcccggagaguaauucaggaaggcaaaaccgaaggcuggggucagcuaguggaguugcc          -  ------------------------uaa         -----    -u   --   a        -  gggauguucgacccua    ag  ucuuuc     -u      u      augauuca    a accaa    a  uu 
                                 GGC    uugaagga                                                            agaaaacaag cg                           ggagggaau     uggu  ucc  uug caguaagc cu                ccag  gu      cacag  gcuggu ucauuc        ccag g     ugca uu  a
                                 |||    ||||||||                                                            |||||||||| ||                           |||||||||     ||||  |||  ||| |||||||| ||                ||||  ||      |||||  |||||| ||||||        |||| |     |||| ||   
                                 ccg    gauuuccu                                                            uuuuuuguuc gu                           ucuuccuua     gucg  agg  aac gucguucg gg                gguc  ca      guguu  uggcca agugag        gguc c     acgu ag  g
uuguuucgggauguacuaaagugaaagcggaac   ucuu        ------------------------------------caaaagaauuuuuguuuuuuguug          u  uuguguaaugaaucucgucccacagug         caguu    uu   uc   -        a  ---------------a    cg  ------     uc      c      ------ga    - -----    -  ua 


Annotation confidence Not enough data
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Genome context
chr7: 2035062-2035473 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR2610b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR2610b

Accession MIMAT0013319
Description Medicago truncatula mtr-miR2610b mature miRNA
Sequence 2 - AGAUUGAGACUUGUAUGGCUU - 22
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796