Stem-loop mtr-MIR169j

Accession

MI0011868

Description

Medicago truncatula mtr-MIR169j precursor miRNA

Literature search

12 open access papers mention mtr-MIR169j
(56 sentences)

Sequence

agagguagagagaguauauuUGAGCCAGGAUGACUUGCCGGcauuugcuguaaauguagaagaaucccuucucacaauuaagguguuguuggcgaggaaucuaggcucauauuugcucucuuuccacuca
.((((.((((((((((.((.((((((.((((..((((((((((..((((.(((.((((((((.....))))).))).))).)))).))))))))))..)))).)))))).)).)))))))))).).))).

Structure

a   - u          u  u      A    GA          uu    g   a   -     a 
 gag g agagagagua au UGAGCC GGAU  CUUGCCGGca  ugcu uaa ugu agaag a
 ||| | |||||||||| || |||||| ||||  ||||||||||  |||| ||| ||| ||||| u
 cuc c uuucucucgu ua acucgg ucua  gagcgguugu  gugg auu aca ucuuc c
a   a c          u  u      a    ag          -u    a   a   c     c 

Annotation confidence Low

Genome context

chr2: 13454079-13454208 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mtr-MIR169j

Mature mtr-miR169j

• Accession: MIMAT0013321
• Description: Medicago truncatula mtr-miR169j mature miRNA
• Sequence: 21 - UGAGCCAGGAUGACUUGCCGG - 41
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553