Stem-loop mtr-MIR2111b

Accession

MI0011905

Description

Medicago truncatula mtr-MIR2111b precursor miRNA

Literature search

3 open access papers mention mtr-MIR2111b
(9 sentences)

Sequence

98719 reads, 692.0 reads per million, 111 experiments

auauugggauuugaugggaUAAUCUGCAUCCUGAGGUUUAgaacaacaaaugcguaauuauaucuaAGCCUUGGAAUGCAGAUUAUCucuuccuuaucaccaaugc
.(((((((((..((.((((((((((((((.((((((((((((....................)))))))))))).)))))))))))))).))...))).)))))).

Structure

a      -   -uu  u              C            acaacaaau 
 uauugg gau   ga gggaUAAUCUGCAU CUGAGGUUUAga         g
 |||||| |||   || |||||||||||||| ||||||||||||          
 guaacc cua   cu cuCUAUUAGACGUA GGUUCCGAaucu         c
c      a   uuc  u              A            auauuaaug 

Annotation confidence High

Genome context

Unknown

Mature mtr-miR2111b-5p

• Accession: MIMAT0013358
• Description: Medicago truncatula mtr-miR2111b-5p mature miRNA
• Sequence: 20 - UAAUCUGCAUCCUGAGGUUUA - 40
• Evidence: experimental ; 454 [1]

Mature mtr-miR2111b-3p

• Accession: MIMAT0054881
• Description: Medicago truncatula mtr-miR2111b-3p mature miRNA
• Sequence: 67 - AGCCUUGGAAUGCAGAUUAUC - 87
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796