Stem-loop mtr-MIR2111k

Accession

MI0011908

Description

Medicago truncatula mtr-MIR2111k precursor miRNA

Gene family

MIPF0000754; MIR2111

Literature search

2 open access papers mention mtr-MIR2111k
(8 sentences)

Sequence

auauuggguggggaugggaUAAUCUGCAUCCUGAGGUUUAgaacaauaguuucuucauuuccuuaaaaagaaaauaguugcguaauuguuucuaagccuuggauuguagauuauuuuuuccuuaacaucaaugc
.(((((((((((((.(((((((((((((..(((((((((((((((((.((..((...((((........))))..))..))...)))).)))))))))))))..))))))))))))).))))).)).)))))).

Structure

a      -  -     u             UC             -    --a  uu  uca    cuu 
 uauugg gu gggga gggaUAAUCUGCA  CUGAGGUUUAgaa caau   gu  cu   uuuc   a
 |||||| || ||||| |||||||||||||  ||||||||||||| ||||   ||  ||   ||||    
 guaacu ca uuccu uuuuauuagaugu  gguuccgaaucuu guua   cg  ga   aaag   a
c      a  a     u             ua             u    aug  uu  -ua    aaa 

Annotation confidence Not enough data

Genome context

chr7: 16644233-16644366 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from mtr-MIR2111k

Mature mtr-miR2111k

• Accession: MIMAT0013361
• Description: Medicago truncatula mtr-miR2111k mature miRNA
• Sequence: 20 - UAAUCUGCAUCCUGAGGUUUA - 40
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796