Stem-loop mtr-MIR2629g

Accession

MI0011916

Description

Medicago truncatula mtr-MIR2629g precursor miRNA

Gene family

MIPF0000824; MIR2629

Sequence

aauuauggaaucagcuacaguuaauuaucaaagaaaacuucgacaguuaauugccgcggaguuuuaaaauuaaaauuuaacaccucaugcucuuuauuaaaugcauacguuauaucauuuaauaaagaguaugugguguuugauuuaauuuaauuugauauuaacauaaauaaauggcagauaugugcauguguguuaaauuuuaauuuugaaacuccgcggcaguaacugccgaAGUUUUCCUCGGUAGUUAACUgcaaaaguuuccucgaua
.(((..((((.......((((((((((((...((((((((((.((((((.(((((((((((((((((((((((((((((((((..((((((((((((((((((.(((.....)))))))))))))))))))))(((((((.((((......)))).))))))).(((......)))(((......)))....))))))))))))))))))))))))))))))))))))))).))))))))))...)))))))))))).......))))..))).

Structure

a   au    ucagcua            aaa          a      a                                 ---------------------------------------------------------cu                  c   c 
 auu  ggaa       caguuaauuauc   gaaaacuucg caguua uugccgcggaguuuuaaaauuaaaauuuaacac                                                           caugcucuuuauuaaaug aua g
 |||  ||||       ||||||||||||   |||||||||| |||||| |||||||||||||||||||||||||||||||||                                                           |||||||||||||||||| ||| u
 uag  ccuu       gUCAAUUGAUGG   CUUUUGAagc gucaau gacggcgccucaaaguuuuaauuuuaaauugug                                                           guaugagaaauaauuuac uau u
a   cu    ugaaaac            CUC          c      -                                 uguacguguauagacgguaaauaaauacaauuauaguuuaauuuaauuuaguuuguggu                  -   a 

Annotation confidence Not enough data

Genome context

chr7: 13457501-13457774 [+]

Mature mtr-miR2629g

• Accession: MIMAT0013369
• Description: Medicago truncatula mtr-miR2629g mature miRNA
• Sequence: 236 - AGUUUUCCUCGGUAGUUAACU - 256
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796