miRBase entry: mtr-MIR2630i

Stem-loop mtr-MIR2630i


Accession
MI0011928
Description
Medicago truncatula mtr-MIR2630i precursor miRNA
Gene family
MIPF0000814; MIR2630

Literature search
2 open access papers mention mtr-MIR2630i
(2 sentences)

Sequence

cccugcaaauauagaauauuUGGUUUUGGUCCUUGGUAUUUuguuuuaauccuuguaaaaucauuucauauugaaauugguccauauaauauucauuuuaguccucauauugagggucuaaaaucaaauauucuacauacuacaagaacaaaauccaauaugaaucaauuuuacaaggacuaaaacaaaauaccaaggaccaaaaccaaauuuuuaauauuugcagga
.(((((((((((.(((.(((((((((((((((((((((((((((((((.((((((((((((...(((((((((....((((...((.((((((.(((((((((((((...)))))).)))))))..)))))).))...))))...((......)))))))))))...)))))))))))).))))))))))))))))))))))))))))))).))).))))))))))).

Structure
c           a   u                               a            cau         ---------aaau    cca  u      -c       -      u 
 ccugcaaauau gaa auuUGGUUUUGGUCCUUGGUAUUUuguuuua uccuuguaaaau   uucauauug             uggu   ua aauauu  auuuuag uccuca  
 ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||   |||||||||             ||||   || ||||||  ||||||| |||||| a
 ggacguuuaua uuu uaaaccaaaaccaggaaccauaaaacaaaau aggaacauuuua   aaguauaac             auca   au uuauaa  uaaaauc gggagu  
a           a   u                               c            acu         cuaaaacaagaac    uac  c      ac       u      u 


Annotation confidence Not enough data
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Genome context
chr4: 1908805-1909032 [-]

Database links

Mature mtr-miR2630i

Accession MIMAT0013381
Description Medicago truncatula mtr-miR2630i mature miRNA
Sequence 21 - UGGUUUUGGUCCUUGGUAUUU - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796