Stem-loop mtr-MIR2652b

Accession

MI0011972

Description

Medicago truncatula mtr-MIR2652b precursor miRNA

Gene family

MIPF0000819; MIR2652

Sequence

gcgguuauggugcauaaggaaaucuuuaugcacccugcauaaauccagaaaugguuuuggaguacaacucacagaaaccauuuccacaucaaaaugauuuuggcauaauugggcugggauuuaugcagagugcuggaaaccauuaaguacaucuaaugauuuuguaguacgacucacaaaaaccauuuuugaauuUAUGCAGGGUGCAUAAGGAUUuccuuaugcaccauaaccg
.(((((((((((((((((((((((((((((((((((((((((((.((((((((((((((((((...(((.((((((....(((((((((......(((((((((........)))))))))........))).)))))).(((((........))))).)))))))))...)))).).))))))))))))).)))))))))))))))))))))))))))))))))))))))))))

Structure

g                                           c             - -    aca   c      ----------------acca      -   --caaaau         aua 
 cgguuauggugcauaaggaaaucuuuaugcacccugcauaaau cagaaaugguuuu g gagu   acu acagaa                    uuucca cau        gauuuuggc   a
 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||   ||| ||||||                    |||||| |||        |||||||||    
 gccaauaccacguauuccuUUAGGAAUACGUGGGACGUAUuua guuuuuaccaaaa c cuca   uga uguuuu                    aaaggu gug        uuagggucg   u
-                                           a             a a    gca   -      aguaaucuacaugaauuacc      c   agacguau         ggu 

Annotation confidence Not enough data

Genome context

chr1: 10180420-10180654 [-]

Mature mtr-miR2652b

• Accession: MIMAT0013425
• Description: Medicago truncatula mtr-miR2652b mature miRNA
• Sequence: 196 - UAUGCAGGGUGCAUAAGGAUU - 216
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796