Stem-loop mtr-MIR2655a

Accession

MI0011987

Description

Medicago truncatula mtr-MIR2655a precursor miRNA

Gene family

MIPF0000813; MIR2655

Sequence

cccauaaguaauaaaaggucCGUUUAGGUCCCUUAACUUUAuuuaaaguaucgguuugguccuuucuguuaauuuaauucaaaaaaacguuaaguuuagggaccaaacuaauacuaauuaaauaaguuaagggaccaaacuaauacuaauuaaauaaguuaagggaccaaaauuuaacguuuuuuugaauuaaauuaacagaagggaccaaaccguuacuuuaaauaaaguuaagggaccuaaacgaacuuuuuuuuauuuaaggga
(((.(((((((.(((((((.((((((((((((((((((((((((((((((.((((((((((((((((((((((((((((((((((((((((((((((.((..((.((((.....((((((....((((.........)))).....))))))....))))..))..)).)))))))))))))))))))))))))))))))))))))))))))))).)))))))))))))))))))))))))))))).))))))).))))))).))).

Structure

-   a       u       c                              u                                              a  ga  -a    aauac      -aaua    aag 
 ccc uaaguaa aaaaggu CGUUUAGGUCCCUUAACUUUAuuuaaagua cgguuugguccuuucuguuaauuuaauucaaaaaaacguuaaguuu gg  cc  aacu     uaauua     aguu   g
 ||| ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||  ||  ||||     ||||||     ||||   g
 ggg auuuauu uuuuuca gcaaauccagggaauugaaauaaauuucau gccaaaccagggaagacaauuaaauuaaguuuuuuugcaauuuaaa cc  gg  uuga     auuaau     ucaa   a
a   a       u       a                              u                                              a  ag  aa    -auaa      cauaa    acc 

Annotation confidence Not enough data

Genome context

chr3: 40642836-40643102 [+]

Mature mtr-miR2655a

• Accession: MIMAT0013440
• Description: Medicago truncatula mtr-miR2655a mature miRNA
• Sequence: 21 - CGUUUAGGUCCCUUAACUUUA - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796