miRBase entry: mtr-MIR2655c

Stem-loop mtr-MIR2655c


Accession
MI0011989
Description
Medicago truncatula mtr-MIR2655c precursor miRNA
Gene family
MIPF0000813; MIR2655


Sequence

cccuuaaguaauaaaaggucCGUUUAGGUCCCUUAACUUUAuuuaaaguaucaguuugauccuuucugauaauuuaauuaaaaaaacauuaaguuuagggaccaaacuaauauuaauuaaauaaguuaagggagaaaacuaauaccaauuaaauaagauaagagaccaaaauuuaacuuuuauuugaauuaaauuaauagaaaggaccaaaccgacacuuucacuaaaguuaagggagcaaaacggaccuuuuauuacuuaugga
.((.(((((((((((((((((((((.(.(((((((((((((...(((((.((.(((((.(((((((((.((((((((((........(((((..((((........))))..)))))............((.............)).........(((((((((............))))))))).)))))))))).))))))))).))))).)).)))))...))))))))))))).).))))))))))))))))))))).)).

Structure
c  u                     A G             uuu     a  a     a         a          -------------------------------------------------------------aaaaaaac     gu    gga 
 cc uaaguaauaaaaggucCGUUU G UCCCUUAACUUUA   aaagu uc guuug uccuuucug uaauuuaauu                                                                     auuaa  uuag   c
 || ||||||||||||||||||||| | |||||||||||||   ||||| || ||||| ||||||||| ||||||||||                                                                     |||||  ||||    
 gg auucauuauuuuccaggcaaa c agggaauugaaau   uuuca ag caaac aggaaagau auuaaauuaa                                                                     uaauu  aauc   c
a  u                     a g             cac     c  c     c         a          guuuauuuucaauuuaaaaccagagaauagaauaaauuaaccauaaucaaaagagggaauugaauaaau     au    aaa 


Annotation confidence Not enough data
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Genome context
chr1: 20434620-20434884 [+]

Database links

Mature mtr-miR2655c

Accession MIMAT0013442
Description Medicago truncatula mtr-miR2655c mature miRNA
Sequence 21 - CGUUUAGGUCCCUUAACUUUA - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796