miRBase entry: mtr-MIR2655j

Stem-loop mtr-MIR2655j


Accession
MI0011996
Description
Medicago truncatula mtr-MIR2655j precursor miRNA
Gene family
MIPF0000813; MIR2655


Sequence

ccucuaaguaauaaaaggucCGUUUAGGUCCCUUAACUUUAuuuaaaguaucgguuugauccuuucuauuaauuuaauucaaaaaaauguuaaguuuagcgaccaaauuaauacuaauugaauaaguuaagggaccaaacuaauacuaauuaaauaagauaagggaccaaaauuuaacauuuuuuugaauuaaauuaacagaaaggaccaaacugauacuuucaauaaaguuaaaggaccaauacggaccuuuuauuacuuauggga
(((.(((((((((((((((((((...(((((.(((((((((((.((((((((((((((.((((((((.((((((((((((((((((((((((((((((((.....(((((....)))))......)))).((..((..........................))..))..)))))))))))))))))))))))))))).)))))))).)))))))))))))).))))))))))).)))))...))))))))))))))))))).))).

Structure
-   c                   UUA     C           u              a        a                            -----------------------------------------    -gacca     a 
 ccu uaaguaauaaaaggucCGU   GGUCC UUAACUUUAuu aaaguaucgguuug uccuuucu uuaauuuaauucaaaaaaauguuaaguu                                         uagc      aauua u
 ||| |||||||||||||||||||   ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||                                         ||||      |||||  
 ggg auucauuauuuuccaggca   ccagg aauugaaauaa uuucauagucaaac aggaaaga aauuaaauuaaguuuuuuuacaauuuaa                                         auug      uuaau a
a   u                   uaa     a           c              c        c                            aaccagggaauagaauaaauuaaucauaaucaaaccaggga    aauaag     c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 12695849-12696115 [+]

Database links

Mature mtr-miR2655j

Accession MIMAT0013449
Description Medicago truncatula mtr-miR2655j mature miRNA
Sequence 21 - CGUUUAGGUCCCUUAACUUUA - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796