Stem-loop mtr-MIR2659b

Accession

MI0012008

Description

Medicago truncatula mtr-MIR2659b precursor miRNA

Gene family

MIPF0000830; MIR2659

Sequence

auucuacuucaaaucaauggcaucuucaaguucugccggugguucuucaucgaauauggauauagauacuccugcuuaugaaaucaaaggaagaacuaugucgauugaggaaugggaacuaaucauucaagcggaaaauccaguggauuucacuucucuaucucaCCAUGGGUGCGACUUGGUAAGauucuacaagaagcagaag
.((((.((((.......(((.(((((((((((.((((.(((((...............(((((((.(..((((..............))))..).)))))))(((.(((((((((.......))))))....(..((((((...))))))..)..))).)))..))))).)))).)))))))..)))).)))...)))).)))).

Structure

a    a    aaaucaa   c    --       c    g     -----------------------------------------------ucuucaucgaauaug       a ac    gcuuau 
 uucu cuuc       ugg aucu  ucaaguu ugcc guggu                                                              gauauag u  uccu      g
 |||| ||||       ||| ||||  ||||||| |||| |||||                                                              ||||||| |  ||||       
 aaga gaag       auc uaGA  GGUUCAG GUGG UACCa                                                              cuguauc a  agga      a
g    c    ----aac   u    AU       C    G     cucuaucucuucacuuuaggugaccuaaaaggcgaacuuacuaaucaaggguaaggaguuag       a ga    aacuaa 

Annotation confidence Not enough data

Genome context

chr3: 12835653-12835857 [+]

Mature mtr-miR2659b

• Accession: MIMAT0013461
• Description: Medicago truncatula mtr-miR2659b mature miRNA
• Sequence: 166 - CCAUGGGUGCGACUUGGUAAG - 186
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796