Stem-loop mtr-MIR2671a

Accession

MI0012030

Description

Medicago truncatula mtr-MIR2671a precursor miRNA

Gene family

MIPF0000813; MIR2655

Sequence

uucguuugguuccuuaacuaUUAAAAGUUUCGUUUCGGUCCcauaauuuauuuuuugguuucauuuuggucccuuaacuauuaaaaguuucguuuugguccuuuaacuuacuuuuugguuucauuuuggucccuuaacuuauuuuuugguuucauuuugaucccuuaacucuaauacauucauccuaacauaaaggaccaaagugguugacagaggaugaguuaagggaccaaaacaaaaccaaaaaguaaguuaaaggaccaaaacgaaacuuuuaauaguuaagggaccaaaacgaaaccaaaaaguaaguuaagggaccaaaacaaaacuuuuaauaguuaagguaccaaaacgaaa
((((((((((.(((((((((((((((((((.((((.((((((.(((((((((((((((((((.((((((((((((((((((((((((((((((((((((((((((((((((((((((((((..(((((((((((((((((((((((((...((((((((.(((.(((.......................))).))).))))))))....)))))))))))))))))))))))))..)))))))))))))))))))))))))))))))))))))))))))))))))))))))))).))))))))))))))))))).)))))).)))).))))))))))))))))))).))).))))))).

Structure

-       -   u                   C    C      a                   a                                                          ca                         -guu        a   c   acucuaauac 
 uucguuu ggu ccuuaacuaUUAAAAGUUU GUUU GGUCCc uaauuuauuuuuugguuuc uuuuggucccuuaacuauuaaaaguuucguuuugguccuuuaacuuacuuuuugguuu  uuuuggucccuuaacuuauuuuuug    ucauuuug ucc uua          a
 ||||||| ||| ||||||||||||||||||| |||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    |||||||| ||| |||          u
 aagcaaa cca ggaauugauaauuuucaaa caaa ccaggg auugaaugaaaaaccaaag aaaaccagggaauugauaauuuucaaagcaaaaccaggaaauugaaugaaaaaccaaa  aaaaccagggaauugaguaggagac    ggugaaac agg aau          u
a       a   u                   a    a      a                   c                                                          ac                         aguu        c   a   acaauccuac 

Annotation confidence Not enough data

Genome context

chr4: 19714431-19714790 [-]

Mature mtr-miR2671a

• Accession: MIMAT0013483
• Description: Medicago truncatula mtr-miR2671a mature miRNA
• Sequence: 21 - UUAAAAGUUUCGUUUCGGUCC - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796