Stem-loop mtr-MIR2671b

Accession

MI0012031

Description

Medicago truncatula mtr-MIR2671b precursor miRNA

Gene family

MIPF0000813; MIR2655

Sequence

ucguuuuggucccuuaacuaUUAAAAGUUUCGUUUCGGUCCcauaauuuauuuuuggguuuucuuuuggucccuuaacuauuaaaaguuucguuuuggucccuuaacuuauuuuuugguuucguuuuggucccuuaacuuauuuuuugauuucauuuuggucccuuaacucuaauacauucauccuaacauaaaggacuaaagggguugacggaggaugaguuaagggaccaaaacgaaaccgaaaaguaaguuaacggaccaaaacgaagcuuuuaauaguuaaggggccaaaacaaaaccaaaaaguaaguuaagggaccaaaacgaaacuuuuaauaguuaagggaccaaaacgaa
(((((((((((((((((((((((((((((((((((.((((((.((((((((((((.((((((.((((((((((((((((((((((((((((((((((((((.((((((((((((((((((((((((((((((((((((((((((((((...((.(((((((((.(((.......................))).))))))))).))....)))))))))))))))))))))))))))))))))))))))))))))).)))))))))))))))))))))))))))))))))))))).)))))).)))))))))))).)))))).))))))))))))))))))))))))))))))))))).

Structure

-                                   C      a            g      c                                      c                                              -auu  a         c   acucuaauac 
 ucguuuuggucccuuaacuaUUAAAAGUUUCGUUU GGUCCc uaauuuauuuuu gguuuu uuuuggucccuuaacuauuaaaaguuucguuuuggucc uuaacuuauuuuuugguuucguuuuggucccuuaacuuauuuuuug    uc uuuuggucc uua          a
 ||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    || ||||||||| |||          u
 agcaaaaccagggaauugauaauuuucaaagcaaa ccaggg auugaaugaaaa ccaaaa aaaaccggggaauugauaauuuucgaagcaaaaccagg aauugaaugaaaagccaaagcaaaaccagggaauugaguaggaggc    gg gaaaucagg aau          u
a                                   a      a            a      c                                      c                                              aguu  g         a   acaauccuac 

Annotation confidence Not enough data

Genome context

chr8: 22898470-22898828 [-]

Mature mtr-miR2671b

• Accession: MIMAT0013484
• Description: Medicago truncatula mtr-miR2671b mature miRNA
• Sequence: 21 - UUAAAAGUUUCGUUUCGGUCC - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796