Stem-loop mtr-MIR2676c

Accession

MI0012047

Description

Medicago truncatula mtr-MIR2676c precursor miRNA

Gene family

MIPF0000831; MIR2676

Sequence

aaucuauuggaauuaucauuuguuuuaaauuaauuuggauuuuggaaccaggccuuugcaauuugcuucauaaacuuugaaguauuguuucauaaaucacauuggaaggcuuauuacuuaagaguguguuuggaugggggaauguuuugagggaauguauuguuuuaagggaauucaaauacuuuggggugaauucCAUUGUUUGGAUAAUAAUUUGaagcauuuucaaaaugaug
.............(((((((((((((((((((((((((((..(((((..(((((((((((((..((((((.......)))))))))))................)))))))).((((((..(((.((((((((((.......(.((((((((.((....)).)))))))).)))))))))))))).)))))).)))))..))))))))..)))))))))))).......)))))))

Structure

aaucuauuggaau       -------            --        uu     ccaggccuuugcaauuugcuucauaaacuuugaaguauuguuucauaaaucacauuggaaggcuua      aa   u          gggggaa g        g  u 
             uaucauu       uguuuuaaauua  auuuggau  uggaa                                                                  uuacuu  gag guguuuggau       u uuuugagg aa g
             |||||||       ||||||||||||  ||||||||  |||||                                                                  ||||||  ||| ||||||||||       | |||||||| ||  
             guaguaa       acgaaGUUUAAU  UAGGUUUG  ACcuu                                                                  aguggg  uuu cauaaacuua       a ggaauuuu uu u
-------------       aacuuuu            AA        UU     -----------------------------------------------------------------a      -g   -          ------- g        g  a 

Annotation confidence Not enough data

Genome context

chr2: 880135-880370 [+]

Mature mtr-miR2676c

• Accession: MIMAT0013500
• Description: Medicago truncatula mtr-miR2676c mature miRNA
• Sequence: 197 - CAUUGUUUGGAUAAUAAUUUG - 217
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796