Stem-loop mtr-MIR2677

Accession

MI0012052

Description

Medicago truncatula mtr-MIR2677 precursor miRNA

Sequence

caccacuaaauauucuaUUUAUUGAUAUUGCUAAUAGAUuccuauuaagauuaaaaaaaaauaaaggaaaacacuaauaaauacaauagcuauagcuuugucgucgccuagaguuuacaugaaauccuacaaaaaauuuccuuuuuuuuuuauuucccuuuucugucaugaaagguuauagaauaaaaaaaaaucuuuguaaaauaagaaugaauuauuaagauugguaaguugcuauauuuaaccucguuggua
......(((((((...((((((((((.(((.((((..((((.((((((((((..........((((((((............((((.(((....))))))).......(((.((((.....)))).))).......))))))))(((((((((((..((((((......)))))).....))))))))))))))))).....)))).))))..)))).))).))))))))))....)))))))(((.....))).

Structure

------caccac       -ucu          A   C    AG    c    -----      aaaaaaaaauaaaggaaaacacuaauaaauacaauagcuauagcuuugucgucgccuagaguuuacaugaaauccuacaaaaaauuuccuuu           ---cc      ug 
            uaaauau    aUUUAUUGAU UUG UAAU  AUuc uauu     aagauu                                                                                            uuuuuuuauuu     cuuuuc  u
            |||||||    |||||||||| ||| ||||  |||| ||||     ||||||                                                                                            |||||||||||     ||||||   
            auuuaua    ugaaugguua aau auua  uaag auaa     uucuaa                                                                                            aaaaaaauaag     ggaaag  c
augguugcucca       ucgu          g   u    ag    a    aaugu      --------------------------------------------------------------------------------------------           auauu      ua 

Annotation confidence Not enough data

Genome context

chr7: 9566290-9566544 [+]

Mature mtr-miR2677

• Accession: MIMAT0013505
• Description: Medicago truncatula mtr-miR2677 mature miRNA
• Sequence: 18 - UUUAUUGAUAUUGCUAAUAGAU - 39
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796