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miRBase |
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Stem-loop sequence bta-mir-542 |
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Accession | MI0012214 (change log) | |||||||||||||||
Description | Bos taurus miR-542 stem-loop | |||||||||||||||
Gene family | MIPF0000185; mir-542 | |||||||||||||||
Literature search |
4 open access papers mention bta-mir-542 | |||||||||||||||
Stem-loop |
--au aca ac auc gg uca -a c 5' gc g cucagac ucgg auca ugucacgag uac a || | ||||||| |||| |||| ||||||||| ||| 3' cg c gggucug aguc uagu acaguguuc gug c uacu --c ga gaa aa uag ac u |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Clustered miRNAs |
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Database links |
Mature sequence bta-miR-542-5p |
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Accession | MIMAT0013594 |
Sequence |
21 - ucggggaucaucaugucacgag - 42 |
Deep sequencing | 620 reads, 64 experiments |
Evidence | experimental; cloned [1], Illumina [2] |
Predicted targets |
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References |
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1 |
PMID:19758457
"Characterization of bovine miRNAs by sequencing and bioinformatics analysis"
BMC Mol Biol. 10:90(2009).
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2 |
PMID:21912509
"Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle"
Int J Biol Sci. 7:1016-1026(2011).
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