miRBase entry: rno-mir-667

Stem-loop rno-mir-667


Accession
MI0012614
Description
Rattus norvegicus rno-mir-667 precursor miRNA
Gene family
MIPF0000794; mir-667

Literature search
4 open access papers mention rno-mir-667
(9 sentences)

Sequence

28415 reads, 92 reads per million, 278 experiments
guggguacuggccuCGGUGCUGGUGGAGCAGUGAGCACgccauacauuauaucugUGACACCUGCCACCCAGCCCAAggccccuaggcccac
((((((...(((((.((.(((((.(..((((....((((..............))))....))))..)))))))).))))).....))))))

Structure
      --acu     C  U     U GA    UGAG    ccauac 
gugggu     ggccu GG GCUGG G  GCAG    CACg      a
||||||     ||||| || ||||| |  ||||    ||||       
cacccg     ccggA CC CGACC C  CGUC    GUgu      u
      gaucc     A  -     - AC    CACA    cuauau 


Annotation confidence High
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Genome context
chr6: 133869570-133869661 [+]
Clustered miRNAs
22 other miRNAs are < 10 kb from rno-mir-667
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-667-5p

Accession MIMAT0017369
Description Rattus norvegicus rno-miR-667-5p mature miRNA
Sequence 15 - CGGUGCUGGUGGAGCAGUGAGCAC - 38
Evidence experimental
SOLiD [2]

Mature rno-miR-667-3p

Accession MIMAT0012852
Description Rattus norvegicus rno-miR-667-3p mature miRNA
Sequence 56 - UGACACCUGCCACCCAGCCCAA - 77
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  2. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39