miRBase entry: ssc-let-7g

Stem-loop ssc-let-7g


Accession
MI0013087
Description
Sus scrofa ssc-let-7g precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
41 open access papers mention ssc-let-7g
(127 sentences)

Sequence

26246 reads, 6777 reads per million, 15 experiments
ggcUGAGGUAGUAGUUUGUACAGUUugagggucuaugauaccacccgguacaggagauaacuguacaggccacugccuug
....((((((((.((((((((((((.....((((.((.((((....))))))..)))))))))))))))).)))))))).

Structure
ggcU        A            ugagg    -a  a    a 
    GAGGUAGU GUUUGUACAGUU     gucu  ug uacc c
    |||||||| ||||||||||||     ||||  || ||||  
    uuccguca cggacaugucaa     uaga  ac augg c
---g        c            -----    gg  -    c 


Annotation confidence Not enough data
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Genome context
chr13: 37599004-37599083 [+]

Database links

Mature ssc-let-7g

Accession MIMAT0013867
Description Sus scrofa ssc-let-7g mature miRNA
Sequence 4 - UGAGGUAGUAGUUUGUACAGUU - 25
Evidence experimental
Illumina [1,3-4], cloned [2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100