Stem-loop ssc-mir-29a

Accession

MI0013090

Description

Sus scrofa ssc-mir-29a precursor miRNA

Literature search

32 open access papers mention ssc-mir-29a
(100 sentences)

Sequence

343 reads, 216 reads per million, 11 experiments

ccccuuagaggaugACUGAUUUCUUUUGGUGUUCAGagucaauauaauuuuCUAGCACCAUCUGAAAUCGGUUAuaaugauugggg
((((....(..((((((((((((...(((((((.((((...........)))))))))))...))))))))))))..)....))))

Structure

    uuag gg            UUU       C    ucaa 
cccc    a  augACUGAUUUC   UGGUGUU AGag    u
||||    |  ||||||||||||   ||||||| ||||    a
gggg    u  uAUUGGCUAAAG   ACCACGA UCuu    u
    uuag aa            UCU       -    uuaa 

Annotation confidence Not enough data

Genome context

chr18: 19035225-19035310 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-29a

Mature ssc-miR-29a-3p

• Accession: MIMAT0013870
• Description: Sus scrofa ssc-miR-29a-3p mature miRNA
• Sequence: 52 - CUAGCACCAUCUGAAAUCGGUUA - 74
• Evidence: experimental ; Illumina [1,3-4], cloned [2]

Mature ssc-miR-29a-5p

• Accession: MIMAT0037364
• Description: Sus scrofa ssc-miR-29a-5p mature miRNA
• Sequence: 15 - ACUGAUUUCUUUUGGUGUUCAG - 36
• Evidence: experimental ; Illumina [5], 454 [6]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100


5. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252


6. PubMed ID: 25934266
   Evaluation of the capability of the PCV2 genome to encode miRNAs: lack of viral miRNA expression in an experimental infection
   Núñez-Hernández F, Pérez LJ, Vera G, Córdoba S, Segalés J, Sánchez A, Núñez JI
   Vet Res (2015) 46:48