miRBase entry: ssc-mir-30e

Stem-loop ssc-mir-30e


Accession
MI0013092
Description
Sus scrofa ssc-mir-30e precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
21 open access papers mention ssc-mir-30e
(60 sentences)

Sequence

4329 reads, 1458 reads per million, 13 experiments
uuugccacUGUAAACAUCCUUGACUGGAAGCUgugaggcguucccaggagCUUUCAGUCGGAUGUUUACAGCggcaggcu
.(((((.((((((((((((..(((((((((((.(..((....))..).))))))))))))))))))))))).)))))...

Structure
--u     a            UU           g ga  c 
   uugcc cUGUAAACAUCC  GACUGGAAGCU u  gg g
   ||||| ||||||||||||  ||||||||||| |  ||  
   gacgg GACAUUUGUAGG  CUGACUUUCga g  cc u
ucg     C            --           g ac  u 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr6: 157476655-157476734 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-30e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-30e-5p

Accession MIMAT0013872
Description Sus scrofa ssc-miR-30e-5p mature miRNA
Sequence 9 - UGUAAACAUCCUUGACUGGAAGCU - 32
Evidence experimental
Illumina [1,3-4], cloned [2]

Mature ssc-miR-30e-3p

Accession MIMAT0013873
Description Sus scrofa ssc-miR-30e-3p mature miRNA
Sequence 51 - CUUUCAGUCGGAUGUUUACAGC - 72
Evidence experimental
Illumina [1,3-4], cloned [2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100