miRBase entry: ssc-mir-128-2

Stem-loop ssc-mir-128-2


Accession
MI0013094
Description
Sus scrofa ssc-mir-128-2 precursor miRNA
Gene family
MIPF0000048; mir-128

Literature search
9 open access papers mention ssc-mir-128-2
(14 sentences)

Sequence

63 reads, 47 reads per million, 10 experiments
gcagugggaaggggggccgaggcacuguccgagagugaguagcaggucUCACAGUGAACCGGUCUCUUUcccuacugugu
((((((((.((((((((((...((((((..((((.(........).))))))))))...)))))))))).))))))))..

Structure
--        a          agg      cc    g gag 
  gcaguggg aggggggccg   cacugu  gaga u   u
  |||||||| ||||||||||   ||||||  |||| |    
  ugucaucc UUUCUCUGGC   GUGACA  CUcu g   a
ug        c          CAA      --    g acg 


Annotation confidence Not enough data
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Genome context
chr13: 22859191-22859270 [+]

Database links

Mature ssc-miR-128

Accession MIMAT0002157
Description Sus scrofa ssc-miR-128 mature miRNA
Sequence 49 - UCACAGUGAACCGGUCUCUUU - 69
Evidence experimental
Illumina [1-3]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100