miRBase entry: ssc-mir-423

Stem-loop ssc-mir-423


Accession
MI0013099
Description
Sus scrofa ssc-mir-423 precursor miRNA
Gene family
MIPF0000329; mir-423

Literature search
12 open access papers mention ssc-mir-423
(23 sentences)

Sequence

602 reads, 474 reads per million, 15 experiments
aaguuaggcUGAGGGGCAGAGAGCGAGACUUUucuauuuuccaaaAGCUCGGUCUGAGGCCCCUCAGUcuugcuuccuac
((((.((((((((((((..(((.((((.(((((.........))))))))).)))...)))))))))))).)))).....

Structure
-----    u            -AG   G    A     cua 
     aagu aggcUGAGGGGC   AGA CGAG CUUUu   u
     |||| ||||||||||||   ||| |||| |||||   u
     uucg ucUGACUCCCCG   UCU GCUC GAaaa   u
caucc    u            GAG   G    -     ccu 


Annotation confidence High
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Genome context
chr12: 48287019-48287098 [-]

Database links

Mature ssc-miR-423-5p

Accession MIMAT0013880
Description Sus scrofa ssc-miR-423-5p mature miRNA
Sequence 10 - UGAGGGGCAGAGAGCGAGACUUU - 32
Evidence experimental
Illumina [1-3]

Mature ssc-miR-423-3p

Accession MIMAT0013881
Description Sus scrofa ssc-miR-423-3p mature miRNA
Sequence 46 - AGCUCGGUCUGAGGCCCCUCAGU - 68
Evidence experimental
Illumina [1-3]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100