miRBase entry: ssc-mir-151

Stem-loop ssc-mir-151


Accession
MI0013100
Description
Sus scrofa ssc-mir-151 precursor miRNA
Gene family
MIPF0000057; mir-28

Literature search
4 open access papers mention ssc-mir-151
(4 sentences)

Sequence

690 reads, 317 reads per million, 12 experiments
uuuuccugcccUCGAGGAGCUCACAGUCUAGUacgucucauccccuaCUAGACUGAAGCUCCUUGAGGAcagggaucguc
..((((((.((((((((((((..((((((((((.(........).)))))))))).)))))))))))).)))))).....

Structure
---uu      c            CA          c ucu 
     uuccug ccUCGAGGAGCU  CAGUCUAGUa g   c
     |||||| ||||||||||||  |||||||||| |    
     agggac GGAGUUCCUCGA  GUCAGAUCau c   a
cugcu      A            -A          c ccu 


Annotation confidence High
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Genome context
chrUScaf1855: 7087-7166 [+]

Database links

Mature ssc-miR-151-5p

Accession MIMAT0013882
Description Sus scrofa ssc-miR-151-5p mature miRNA
Sequence 12 - UCGAGGAGCUCACAGUCUAGU - 32
Evidence experimental
Illumina [1,3], cloned [2]

Mature ssc-miR-151-3p

Accession MIMAT0013883
Description Sus scrofa ssc-miR-151-3p mature miRNA
Sequence 48 - CUAGACUGAAGCUCCUUGAGGA - 69
Evidence experimental
Illumina [1,3], cloned [2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100