miRBase entry: ssc-mir-10b

Stem-loop ssc-mir-10b


Accession
MI0013102
Description
Sus scrofa ssc-mir-10b precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
28 open access papers mention ssc-mir-10b
(85 sentences)

Sequence

4262 reads, 1208 reads per million, 15 experiments
gucuauauaUACCCUGUAGAACCGAAUUUGUgugguauccacauagucacagauucgauucuaggggaauauauggucga
(.((((((((.((((.(((((.((((((((((.(.(((....))).))))))))))).))))))))).)))))))).)..

Structure
-- u        A    G     C          u g   c 
  g cuauauaU CCCU UAGAA CGAAUUUGUg g uau c
  | |||||||| |||| ||||| |||||||||| | |||  
  c gguauaua gggg aucuu gcuuagacac u aua a
ag u        a    -     a          - g   c 


Annotation confidence Not enough data
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Genome context
chr15: 91419021-91419100 [+]

Database links

Mature ssc-miR-10b

Accession MIMAT0013885
Description Sus scrofa ssc-miR-10b mature miRNA
Sequence 10 - UACCCUGUAGAACCGAAUUUGU - 31
Evidence experimental
Illumina [1,3-4], cloned [2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100