miRBase entry: ssc-mir-152

Stem-loop ssc-mir-152


Accession
MI0013104
Description
Sus scrofa ssc-mir-152 precursor miRNA
Gene family
MIPF0000056; mir-148

Literature search
12 open access papers mention ssc-mir-152
(26 sentences)

Sequence

3823 reads, 1144 reads per million, 13 experiments
cggcccagguucugugauacacuccgacucgggcucuggagcagUCAGUGCAUGACAGAACUUGGgcccggacggaccuu
.((((((((((((((.((.((((..((((...(((....))))))))))).)).)))))))))))))).((.....))..

Structure
-----------c              g  a    cc    cgg   c 
            ggcccagguucugu au cacu  gacu   gcu u
            |||||||||||||| || ||||  ||||   |||  
            ccgGGUUCAAGACA UA GUGA  CUga   cga g
uuccaggcaggc              G  C    --    ---   g 


Annotation confidence Not enough data
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Genome context
chr12: 24289536-24289615 [-]

Database links

Mature ssc-miR-152

Accession MIMAT0013887
Description Sus scrofa ssc-miR-152 mature miRNA
Sequence 45 - UCAGUGCAUGACAGAACUUGG - 65
Evidence experimental
Illumina [1,3-4], cloned [2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100