miRBase entry: ssc-mir-103-2

Stem-loop ssc-mir-103-2


Accession
MI0013105
Description
Sus scrofa ssc-mir-103-2 precursor miRNA
Gene family
MIPF0000024; mir-103

Literature search
25 open access papers mention ssc-mir-103-2
(68 sentences)

Sequence

2056 reads, 686 reads per million, 11 experiments
ugugcuuucagcuucuuuacagugcugccuuguagcauucaggucaAGCAGCAUUGUACAGGGCUAUGAaagaacuaaga
.((.(((((((((.((.(((((((((((.(((.(.(.....).))))))))))))))).)))))..)))))).)).....

Structure
----u  g      --   u  u           c   u g a 
     gu cuuuca  gcu cu uacagugcugc uug a c u
     || ||||||  ||| || ||||||||||| ||| | | u
     ca gaaAGU  CGG GA AUGUUACGACG Aac u g c
agaau  a      AU   -  C           -   - g a 


Annotation confidence Not enough data
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Genome context
chr17: 36149787-36149866 [-]

Database links

Mature ssc-miR-103

Accession MIMAT0002154
Description Sus scrofa ssc-miR-103 mature miRNA
Sequence 47 - AGCAGCAUUGUACAGGGCUAUGA - 69
Evidence experimental
Illumina [1,3-4], cloned [2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100