miRBase entry: ssc-mir-181b-1

Stem-loop ssc-mir-181b-1


Accession
MI0013107
Description
Sus scrofa ssc-mir-181b-1 precursor miRNA
Gene family
MIPF0000007; mir-181

Literature search
25 open access papers mention ssc-mir-181b-1
(47 sentences)

Sequence

60 reads, 83 reads per million, 11 experiments
ggucacaaucAACAUUCAUUGCUGUCGGUGGGUUgaacuguguagacaagcucacugaacaaugaaugcaacuguggccc
(((((((.....(((((((((...((((((((((....(((....))))))))))))).)))))))))....))))))).

Structure
-       aucAA         CUG          gaac   g 
 ggucaca     CAUUCAUUG   UCGGUGGGUU    ugu u
 |||||||     |||||||||   ||||||||||    |||  
 ccggugu     guaaguaac   agucacucga    aca a
c       -caac         --a          ----   g 


Annotation confidence Not enough data
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Genome context
chr10: 26426857-26426936 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-181b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-181b

Accession MIMAT0002126
Description Sus scrofa ssc-miR-181b mature miRNA
Sequence 11 - AACAUUCAUUGCUGUCGGUGGGUU - 34
Evidence experimental
Illumina [1-3]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100