miRBase entry: ssc-mir-27b

Stem-loop ssc-mir-27b


Accession
MI0013109
Description
Sus scrofa ssc-mir-27b precursor miRNA
Gene family
MIPF0000036; mir-27

Literature search
32 open access papers mention ssc-mir-27b
(87 sentences)

Sequence

7657 reads, 1970 reads per million, 14 experiments
acgaggugcAGAGCUUAGCUGAUUGGUGAACAgugacugguuuccgcuuugUUCACAGUGGCUAAGUUCUGCaccugaag
...(((((((((((((((((.((((.(((((((....(((...)))..))))))))))))))))))))))))))))....

Structure
-acg                 G    G       ugac   u 
    aggugcAGAGCUUAGCU AUUG UGAACAg    ugg  
    ||||||||||||||||| |||| |||||||    ||| u
    uccaCGUCUUGAAUCGG UGAC ACUUguu    gcc  
gaag                 -    -       --uc   u 


Annotation confidence High
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Genome context
chr10: 31340880-31340959 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ssc-mir-27b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-27b-5p

Accession MIMAT0013889
Description Sus scrofa ssc-miR-27b-5p mature miRNA
Sequence 10 - AGAGCUUAGCUGAUUGGUGAACA - 32
Evidence experimental
Illumina [1,3-4]

Mature ssc-miR-27b-3p

Accession MIMAT0013890
Description Sus scrofa ssc-miR-27b-3p mature miRNA
Sequence 52 - UUCACAGUGGCUAAGUUCUGC - 72
Evidence experimental
Illumina [1,3-4], cloned [2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100