miRBase entry: ssc-mir-193a

Stem-loop ssc-mir-193a


Accession
MI0013113
Description
Sus scrofa ssc-mir-193a precursor miRNA
Gene family
MIPF0000082; mir-193

Literature search
7 open access papers mention ssc-mir-193a
(15 sentences)

Sequence

15 reads, 36 reads per million, 8 experiments
gcgggagcugagggcUGGGUCUUUGCGGGCGAGAUGAggguguugguucAACUGGCCUACAAAGUCCCAGUccucggccc
...((.(((((((((((((.(((((.((((.((.((((........)))).)).)))).))))).)))))))))))))))

Structure
gcg  a             U     C    G  A    ggu 
   gg gcugagggcUGGG CUUUG GGGC AG UGAg   g
   || ||||||||||||| ||||| |||| || ||||    
   cc cggcuccUGACCC GAAAC UCCG UC Acuu   u
---  -             U     A    G  A    ggu 


Annotation confidence Not enough data
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Genome context
chr12: 45165038-45165117 [-]

Database links

Mature ssc-miR-193a-5p

Accession MIMAT0013894
Description Sus scrofa ssc-miR-193a-5p mature miRNA
Sequence 16 - UGGGUCUUUGCGGGCGAGAUGA - 37
Evidence experimental
Illumina [1,3-4]

Mature ssc-miR-193a-3p

Accession MIMAT0013895
Description Sus scrofa ssc-miR-193a-3p mature miRNA
Sequence 50 - AACUGGCCUACAAAGUCCCAGU - 71
Evidence experimental
Illumina [1,3-4], cloned [2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100