miRBase entry: ssc-mir-99a

Stem-loop ssc-mir-99a


Accession
MI0013114
Description
Sus scrofa ssc-mir-99a precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
12 open access papers mention ssc-mir-99a
(34 sentences)

Sequence

6042 reads, 1671 reads per million, 15 experiments
ccauuggcauaAACCCGUAGAUCCGAUCUUGUGgugaaguggaccgcaCAAGCUCGCUUCUAUGGGUCUgugucagugug
.((((((((((.(((((((((..(((.((((((.((........)))))))).)))..))))))))).))))))))))..

Structure
-c          A         UC   U      g  aag 
  cauuggcaua ACCCGUAGA  CGA CUUGUG ug   u
  |||||||||| |||||||||  ||| |||||| ||    
  gugacugugU UGGGUAUCU  GCU GAACac gc   g
gu          C         UC   C      -  cag 


Annotation confidence High
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Genome context
chr13: 191558610-191558689 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-99a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-99a-5p

Accession MIMAT0013896
Description Sus scrofa ssc-miR-99a-5p mature miRNA
Sequence 12 - AACCCGUAGAUCCGAUCUUGUG - 33
Evidence experimental
Illumina [1,3-4], cloned [2]

Mature ssc-miR-99a-3p

Accession MIMAT0037365
Description Sus scrofa ssc-miR-99a-3p mature miRNA
Sequence 49 - CAAGCUCGCUUCUAUGGGUCU - 69
Evidence experimental
Illumina [5]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100

  5. PubMed ID: 25230983
    The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
    "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
    "J Appl Genet (2015) 56:239-252