miRBase entry: ssc-mir-345-1

Stem-loop ssc-mir-345-1


Accession
MI0013117
Description
Sus scrofa ssc-mir-345-1 precursor miRNA
Gene family
MIPF0000189; mir-345

Literature search
4 open access papers mention ssc-mir-345-1
(5 sentences)

Sequence

20 reads, 26 reads per million, 7 experiments
aacccaggucuGCUGACUCCUAGUCCAGUGCuugugauggcuggugggCCCUGAACUAGGGGUCUGGAGgccuggguuug
(((((((((((.(.((((((((((.(((.((((((........)))))).))).)))))))))).).)))))))))))..

Structure
--           G U          C   U      gau 
  aacccaggucu C GACUCCUAGU CAG GCuugu   g
  ||||||||||| | |||||||||| ||| ||||||    
  uuggguccgGA G CUGGGGAUCA GUC Cgggug   g
gu           G U          A   C      guc 


Annotation confidence Not enough data
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Genome context
chr7: 128658300-128658379 [+]

Database links

Mature ssc-miR-345-5p

Accession MIMAT0013899
Description Sus scrofa ssc-miR-345-5p mature miRNA
Sequence 12 - GCUGACUCCUAGUCCAGUGC - 31
Evidence experimental
Illumina [1-2]

Mature ssc-miR-345-3p

Accession MIMAT0013900
Description Sus scrofa ssc-miR-345-3p mature miRNA
Sequence 49 - CCCUGAACUAGGGGUCUGGAG - 69
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100