miRBase entry: ssc-mir-148b

Stem-loop ssc-mir-148b


Accession
MI0013118
Description
Sus scrofa ssc-mir-148b precursor miRNA
Gene family
MIPF0000056; mir-148

Literature search
14 open access papers mention ssc-mir-148b
(30 sentences)

Sequence

1047 reads, 510 reads per million, 14 experiments
auuugagguGAAGUUCUGUUAUACACUCAGGCuguggcucucugaaagUCAGUGCAUCACAGAACUUUGUcucgaaagcu
.((((((((((((((((((.((.((((..((((.............)))))))).)).))))))))))))))))))....

Structure
---a                  U  A    CA    guggc 
    uuugagguGAAGUUCUGU AU CACU  GGCu     u
    |||||||||||||||||| || ||||  ||||     c
    aagcucUGUUUCAAGACA UA GUGA  CUga     u
ucga                  C  C    --    aaguc 


Annotation confidence Not enough data
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Genome context
chr5: 20388191-20388270 [+]

Database links

Mature ssc-miR-148b-3p

Accession MIMAT0013901
Description Sus scrofa ssc-miR-148b-3p mature miRNA
Sequence 49 - UCAGUGCAUCACAGAACUUUGU - 70
Evidence experimental
Illumina [1-3]

Mature ssc-miR-148b-5p

Accession MIMAT0022955
Description Sus scrofa ssc-miR-148b-5p mature miRNA
Sequence 10 - GAAGUUCUGUUAUACACUCAGGC - 32
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100