Stem-loop sequence ssc-mir-148b

AccessionMI0013118 (change log)
DescriptionSus scrofa miR-148b stem-loop
Gene family MIPF0000056; mir-148
Literature search

14 open access papers mention ssc-mir-148b
(29 sentences)

Stem-loop 
   ---a       ug         u  a    ca    gugg u 
5'     uuugagg  aaguucugu au cacu  ggcu    c c
       |||||||  ||||||||| || ||||  ||||    | u
3'     aagcucu  uucaagaca ua guga  cuga    g c
   ucga       gu         c  c    --    --aa u
Get sequence
Deep sequencing
22579 reads, 5.94e+03 reads per million, 15 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Sscrofa10.2; GCA_000003025.4) Overlapping transcripts
chr5: 20388191-20388270 [+]
sense
ENSSSCT00000000311 ; COPZ1-201; intron 1
ENSSSCT00000020589 ; ssc-mir-148b.1-201; exon 1
Database links

Mature sequence ssc-miR-148b-5p

Accession MIMAT0022955
Sequence

10 -  

gaaguucuguuauacacucaggc

 - 32

Get sequence
Deep sequencing282 reads, 13 experiments
Evidence experimental; Illumina [2]

Mature sequence ssc-miR-148b-3p

Accession MIMAT0013901
Previous IDsssc-miR-148b
Sequence

49 -  

ucagugcaucacagaacuuugu

 - 70

Get sequence
Deep sequencing22294 reads, 15 experiments
Evidence experimental; Illumina [1-3]

References

1
PMID:19917043 "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing" Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B Anim Genet. 41:159-168(2010).
2
PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).
3
PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).