miRBase entry: ssc-mir-664

Stem-loop ssc-mir-664


Accession
MI0013123
Description
Sus scrofa ssc-mir-664 precursor miRNA
Gene family
MIPF0000300; mir-664

Literature search
3 open access papers mention ssc-mir-664
(10 sentences)

Sequence

16 reads, 34 reads per million, 6 experiments
gaacauugaaaCAGGCUAGGAGAAGUGAUUGGAUagaaaaugguauucUAUUCAUUUAUCUCCCAGCCUACAaaaagaaa
............(((((.(((((..(((.(((((((((.......))))))))).)))))))).)))))...........

Structure
gaacauugaaaC     A     AG   U         aa 
            AGGCU GGAGA  UGA UGGAUagaa  u
            ||||| |||||  ||| |||||||||  g
            UCCGA CCUCU  AUU ACUUAUcuu  g
-aaagaaaaACA     C     --   U         au 


Annotation confidence Not enough data
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Genome context
chr10: 11890513-11890592 [+]

Database links

Mature ssc-miR-664-5p

Accession MIMAT0013906
Description Sus scrofa ssc-miR-664-5p mature miRNA
Sequence 12 - CAGGCUAGGAGAAGUGAUUGGAU - 34
Evidence experimental
Illumina [1-3]

Mature ssc-miR-664-3p

Accession MIMAT0013907
Description Sus scrofa ssc-miR-664-3p mature miRNA
Sequence 49 - UAUUCAUUUAUCUCCCAGCCUACA - 72
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100