Stem-loop sequence ssc-mir-92a-2

Accession

MI0013124 (change log)

Description

Sus scrofa miR-92a-2 stem-loop

Gene family

MIPF0000013; mir-25

Literature search

17 open access papers mention ssc-mir-92a-2
(47 sentences)

Stem-loop

   cu   a    ug   g     uu  u   u     guggu 
5'   uuc uccg  ggu gggau  gu gca uacuu     g
     ||| ||||  ||| |||||  || ||| |||||      
3'   aag aggu  ccg cccug  ca cgu augaa     u
   -a   a    gu   g     uu  -   u     auaug 

Deep sequencing

13694 reads, 2.05e+03 reads per million, 15 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chrX: 126199512-126199591 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ssc-mir-92a-2

• ssc-mir-106a: chrX: 126200183-126200263 [-]
• ssc-mir-18b: chrX: 126200019-126200101 [-]
• ssc-mir-20b-1: chrX: 126199775-126199854 [-]
• ssc-mir-19b-2: chrX: 126199650-126199729 [-]
• ssc-mir-92a-2: chrX: 126199512-126199591 [-]
• ssc-mir-363-1: chrX: 126199347-126199426 [-]

Database links

• EntrezGene:MIR92A-2
• miRBase Tracker:MI0013124

Mature sequence ssc-miR-92a

• Accession: MIMAT0013908
• Sequence: 51 - uauugcacuugucccggccugu - 72
• Deep sequencing: 36935 reads, 15 experiments
• Evidence: experimental; Illumina [1,3-4], cloned [2]

References

1. PMID:19917043 "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing" Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B Anim Genet. 41:159-168(2010).
2. PMID:20180025 "Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue" Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS Mol Biol Rep. 37:3567-3574(2010).
3. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).
4. PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).