miRBase entry: ssc-mir-192

Stem-loop ssc-mir-192


Accession
MI0013127
Description
Sus scrofa ssc-mir-192 precursor miRNA
Gene family
MIPF0000063; mir-192

Literature search
17 open access papers mention ssc-mir-192
(112 sentences)

Sequence

14 reads, 23 reads per million, 8 experiments
gcacagggcuCUGACCUAUGAAUUGACAGCCagugcucucaucuccccucuggcugccaauuccauaggucacagguaug
...((.(.((.((((((((((((((.(((((((................))))))).))))).))))))))).)).).))

Structure
gca  g g  C         -     A       ugcucuc 
   ca g cu UGACCUAUG AAUUG CAGCCag       a
   || | || ||||||||| ||||| |||||||        
   gu u ga acuggauac uuaac gucgguc       u
---  a g  c         c     c       uccccuc 


Annotation confidence Not enough data
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Genome context
chr2: 6416980-6417059 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-192
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-192

Accession MIMAT0013910
Description Sus scrofa ssc-miR-192 mature miRNA
Sequence 11 - CUGACCUAUGAAUUGACAGCC - 31
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100