miRBase entry: ssc-mir-34c-1

Stem-loop ssc-mir-34c-1


Accession
MI0013132
Description
Sus scrofa ssc-mir-34c-1 precursor miRNA
Gene family
MIPF0000039; mir-34

Literature search
11 open access papers mention ssc-mir-34c-1
(137 sentences)

Sequence

5197 reads, 2544 reads per million, 10 experiments
agucuaguuacuAGGCAGUGUAGUUAGCUGAUUGCugauaaaaccaaucacuaaccacacggccagguaaaaagauuugg
.((((..(((((.(((.((((.(((((.((((((.(......).))))))))))).)))).))).)))))..))))....

Structure
---a    ag     A   A    A     C      C ga 
    gucu  uuacu GGC GUGU GUUAG UGAUUG u  u
    ||||  ||||| ||| |||| ||||| |||||| |   
    uaga  aaugg ccg caca caauc acuaac a  a
gguu    aa     a   g    c     -      c aa 


Annotation confidence Not enough data
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Genome context
chr9: 44166873-44166952 [-]

Database links

Mature ssc-miR-34c

Accession MIMAT0013916
Description Sus scrofa ssc-miR-34c mature miRNA
Sequence 13 - AGGCAGUGUAGUUAGCUGAUUGC - 35
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100