miRBase entry: ssc-mir-425

Stem-loop ssc-mir-425


Accession
MI0013133
Description
Sus scrofa ssc-mir-425 precursor miRNA
Gene family
MIPF0000242; mir-425

Literature search
2 open access papers mention ssc-mir-425
(9 sentences)

Sequence

275 reads, 169 reads per million, 12 experiments
aagugcuuuggAAUGACACGAUCACUCCCGUUGAgugggcacccaaguagccAUCGGGAAUGUCGUGUCCGCCCagugcu
....((.((((...(((((((.((.(((((....((((..((....))..))))))))).)))))))))...)))).)).

Structure
aagu  u    AAU       U  C     UUGA    gc  c 
    gc uugg   GACACGA CA UCCCG    gugg  ac c
    || ||||   ||||||| || |||||    ||||  ||  
    cg gaCC   CUGUGCU GU AGGGC    UAcc  ug a
---u  u    CGC       -  A     ----    ga  a 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr13: 34898111-34898190 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-425
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-425-5p

Accession MIMAT0013917
Description Sus scrofa ssc-miR-425-5p mature miRNA
Sequence 12 - AAUGACACGAUCACUCCCGUUGA - 34
Evidence experimental
Illumina [1-2]

Mature ssc-miR-425-3p

Accession MIMAT0013918
Description Sus scrofa ssc-miR-425-3p mature miRNA
Sequence 53 - AUCGGGAAUGUCGUGUCCGCCC - 74
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100