miRBase entry: ssc-mir-142

Stem-loop ssc-mir-142


Accession
MI0013134
Description
Sus scrofa ssc-mir-142 precursor miRNA
Gene family
MIPF0000084; mir-142

Literature search
15 open access papers mention ssc-mir-142
(41 sentences)

Sequence

864 reads, 378 reads per million, 13 experiments
gugcagucaccCAUAAAGUAGAAAGCACUACUaacagcacuggagggUGUAGUGUUUCCUACUUUAUGGaugaguguacu
(((((.(((.(((((((((((.(((((((((...(..(....)..)..))))))))).))))))))))).))).))))).

Structure
-     g   c           A         Uaa ag a 
 gugca uca cCAUAAAGUAG AAGCACUAC   c  c c
 ||||| ||| ||||||||||| |||||||||   |  |  
 caugu agu GGUAUUUCAUC UUUGUGAUG   g  g u
u     g   a           C         -Ug ga g 


Annotation confidence High
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Genome context
chr12: 36203916-36203995 [+]

Database links

Mature ssc-miR-142-5p

Accession MIMAT0013919
Description Sus scrofa ssc-miR-142-5p mature miRNA
Sequence 12 - CAUAAAGUAGAAAGCACUACU - 32
Evidence experimental
Illumina [1,3]

Mature ssc-miR-142-3p

Accession MIMAT0020362
Description Sus scrofa ssc-miR-142-3p mature miRNA
Sequence 48 - UGUAGUGUUUCCUACUUUAUGG - 69
Evidence experimental
Illumina [2-3]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100