miRBase entry: ssc-mir-424

Stem-loop ssc-mir-424


Accession
MI0013135
Description
Sus scrofa ssc-mir-424 precursor miRNA
Gene family
MIPF0000164; mir-322

Literature search
9 open access papers mention ssc-mir-424
(86 sentences)

Sequence

441 reads, 197 reads per million, 12 experiments
uccgaggggaugCAGCAGCAAUUCAUGUUUUGAAgggcuuuaaaugguuCAAAACGUGAGGCGCUGCUAUacccccucgc
..(((((((.((.((((((..((((((((((((...(((......)))))))))))))))..)))))).)).))))))).

Structure
uc       a  C      AA            Agg   uu 
  cgagggg ug AGCAGC  UUCAUGUUUUGA   gcu  a
  ||||||| || ||||||  ||||||||||||   |||   
  gcucccc aU UCGUCG  GAGUGCAAAACu   ugg  a
-c       c  A      CG            ---   ua 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssc-miR-424-5p

Accession MIMAT0013920
Description Sus scrofa ssc-miR-424-5p mature miRNA
Sequence 13 - CAGCAGCAAUUCAUGUUUUGAA - 34
Evidence experimental
Illumina [1,3], cloned [2]

Mature ssc-miR-424-3p

Accession MIMAT0013921
Description Sus scrofa ssc-miR-424-3p mature miRNA
Sequence 50 - CAAAACGUGAGGCGCUGCUAU - 70
Evidence experimental
Illumina [1,3]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328