Stem-loop sequence ssc-mir-424

Accession

MI0013135 (change log)

Description

Sus scrofa miR-424 stem-loop

Gene family

MIPF0000164; mir-322

Literature search

9 open access papers mention ssc-mir-424
(86 sentences)

Stem-loop

   uc       a  c      aa            agg   uu 
5'   cgagggg ug agcagc  uucauguuuuga   gcu  a
     ||||||| || ||||||  ||||||||||||   |||   
3'   gcucccc au ucgucg  gagugcaaaacu   ugg  a
   -c       c  a      cg            ---   ua 

Deep sequencing

3967 reads, 447 reads per million, 15 experiments

Confidence

Annotation confidence: not enough data

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Database links

• EntrezGene:MIR424
• miRBase Tracker:MI0013135

Mature sequence ssc-miR-424-5p

• Accession: MIMAT0013920
• Previous IDs: ssc-miR-424
• Sequence: 13 - cagcagcaauucauguuuugaa - 34
• Deep sequencing: 3861 reads, 15 experiments
• Evidence: experimental; Illumina [1,3], cloned [2]

Mature sequence ssc-miR-424-3p

• Accession: MIMAT0013921
• Previous IDs: ssc-miR-424*
• Sequence: 50 - caaaacgugaggcgcugcuau - 70
• Deep sequencing: 105 reads, 14 experiments
• Evidence: experimental; Illumina [1,3]

References

1. PMID:19917043 "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing" Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B Anim Genet. 41:159-168(2010).
2. PMID:20180025 "Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue" Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS Mol Biol Rep. 37:3567-3574(2010).
3. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).