miRBase entry: ssc-mir-195

Stem-loop ssc-mir-195


Accession
MI0013141
Description
Sus scrofa ssc-mir-195 precursor miRNA
Gene family
MIPF0000006; mir-15

Literature search
9 open access papers mention ssc-mir-195
(21 sentences)

Sequence

223 reads, 131 reads per million, 11 experiments
cagccccccuggcucUAGCAGCACAGAAAUAUUGGCaccgggcggagagucugccaguauuggcugugcugccccaggca
.......(((((.....(((((((((.((((((((((...(((.....)))))))))))))..))))))))).)))))..

Structure
cagcccc     cucUA         -A          ccg   g 
       ccugg     GCAGCACAG  AAUAUUGGCa   ggc g
       |||||     |||||||||  ||||||||||   ||| a
       ggacc     cgucguguc  uuaugaccgu   cug g
-----ac     ----c         gg          ---   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr12: 54717315-54717394 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-195
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-195

Accession MIMAT0013928
Description Sus scrofa ssc-miR-195 mature miRNA
Sequence 16 - UAGCAGCACAGAAAUAUUGGC - 36
Evidence experimental
Illumina [1,3], cloned [2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328