miRBase entry: ssc-mir-331

Stem-loop ssc-mir-331


Accession
MI0013142
Description
Sus scrofa ssc-mir-331 precursor miRNA
Gene family
MIPF0000199; mir-331

Literature search
4 open access papers mention ssc-mir-331
(26 sentences)

Sequence

172 reads, 103 reads per million, 11 experiments
uuguuuggguuuguUCUAGGUAUGGUCCCAGGGAUcccagaucaaaccagGCCCCUGGGCCUAUCCUAGAAccaaccuaa
....(((((((.((((((((.((((.(((((((...((...........)).))))))).)))))))))))).)))))))

Structure
uugu       u        U    U       AUc  agau 
    uuggguu guUCUAGG AUGG CCCAGGG   cc    c
    ||||||| |||||||| |||| |||||||   ||    a
    aauccaa cAAGAUCC UAUC GGGUCCC   Gg    a
----       c        -    C       --C  acca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr5: 92224978-92225057 [-]

Database links

Mature ssc-miR-331-5p

Accession MIMAT0013929
Description Sus scrofa ssc-miR-331-5p mature miRNA
Sequence 15 - UCUAGGUAUGGUCCCAGGGAU - 35
Evidence experimental
Illumina [1-3]

Mature ssc-miR-331-3p

Accession MIMAT0013930
Description Sus scrofa ssc-miR-331-3p mature miRNA
Sequence 51 - GCCCCUGGGCCUAUCCUAGAA - 71
Evidence experimental
Illumina [1-3]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100