miRBase entry: ssc-mir-127

Stem-loop ssc-mir-127


Accession
MI0013144
Description
Sus scrofa ssc-mir-127 precursor miRNA
Gene family
MIPF0000080; mir-127

Literature search
13 open access papers mention ssc-mir-127
(47 sentences)

Sequence

27 reads, 46 reads per million, 10 experiments
aucgcugucuccagccugcugaagcucagagggcucugauucagaaagaucaUCGGAUCCGUCUGAGCUUGGCUggucgg
....(((...((((((.....(((((((((.((.((((((((.....))..)))))).)).))))))))))))))).)))

Structure
aucg   ucu      ugcug         g  c      --  a 
    cug   ccagcc     aagcucaga gg ucugau  uc g
    |||   ||||||     ||||||||| || ||||||  || a
    ggc   ggUCGG     UUCGAGUCU CC AGGCUa  ag a
----   --u      -----         G  U      cu  a 


Annotation confidence Not enough data
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Genome context
chr7: 132099553-132099632 [+]

Database links

Mature ssc-miR-127

Accession MIMAT0013932
Description Sus scrofa ssc-miR-127 mature miRNA
Sequence 53 - UCGGAUCCGUCUGAGCUUGGCU - 74
Evidence experimental
Illumina [1-3]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100