miRBase entry: ssc-mir-532

Stem-loop ssc-mir-532


Accession
MI0013150
Description
Sus scrofa ssc-mir-532 precursor miRNA
Gene family
MIPF0000113; mir-188

Literature search
6 open access papers mention ssc-mir-532
(10 sentences)

Sequence

187 reads, 104 reads per million, 12 experiments
uugcuuucucucuuaCAUGCCUUGAGUGUAGGACCGUuggcaucugaauacCCUCCCACACCCAAGGCUUGCAggagggc
.......(((((((.((.((((((.((((.(((..((...(....)...))..))).)))).)))))).)).))))))).

Structure
uugcuuu       a  U      A    A   CC  ugg a 
       cucucuu CA GCCUUG GUGU GGA  GU   c u
       ||||||| || |||||| |||| |||  ||   |  
       gggaggA GU CGGAAC CACA CCU  ca   g c
------c       C  U      C    C   CC  uaa u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrX: 48632025-48632104 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from ssc-mir-532
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-532-5p

Accession MIMAT0013940
Description Sus scrofa ssc-miR-532-5p mature miRNA
Sequence 16 - CAUGCCUUGAGUGUAGGACCGU - 37
Evidence experimental
Illumina [1-2]

Mature ssc-miR-532-3p

Accession MIMAT0013941
Description Sus scrofa ssc-miR-532-3p mature miRNA
Sequence 52 - CCUCCCACACCCAAGGCUUGCA - 73
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100