Stem-loop sequence ssc-mir-532

Accession

MI0013150 (change log)

Description

Sus scrofa miR-532 stem-loop

Gene family

MIPF0000113; mir-188

Literature search

6 open access papers mention ssc-mir-532
(10 sentences)

Stem-loop

   uugcuuu       a  u      a    a   cc  ugg a 
5'        cucucuu ca gccuug gugu gga  gu   c u
          ||||||| || |||||| |||| |||  ||   |  
3'        gggagga gu cggaac caca ccu  ca   g c
   ------c       c  u      c    c   cc  uaa u 

Deep sequencing

2148 reads, 233 reads per million, 15 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chrX: 48632025-48632104 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ssc-mir-532

• ssc-mir-532: chrX: 48632025-48632104 [+]
• ssc-mir-500: chrX: 48637994-48638073 [+]
• ssc-mir-362: chrX: 48638466-48638544 [+]
• ssc-mir-660: chrX: 48640821-48640889 [+]

Database links

• EntrezGene:MIR532
• miRBase Tracker:MI0013150

Mature sequence ssc-miR-532-5p

• Accession: MIMAT0013940
• Sequence: 16 - caugccuugaguguaggaccgu - 37
• Deep sequencing: 2004 reads, 15 experiments
• Evidence: experimental; Illumina [1-2]

Mature sequence ssc-miR-532-3p

• Accession: MIMAT0013941
• Sequence: 52 - ccucccacacccaaggcuugca - 73
• Deep sequencing: 142 reads, 12 experiments
• Evidence: experimental; Illumina [1-2]

References

1. PMID:19917043 "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing" Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B Anim Genet. 41:159-168(2010).
2. PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).