miRBase entry: ssc-mir-222

Stem-loop ssc-mir-222


Accession
MI0013151
Description
Sus scrofa ssc-mir-222 precursor miRNA
Gene family
MIPF0000051; mir-221

Literature search
11 open access papers mention ssc-mir-222
(25 sentences)

Sequence

517 reads, 208 reads per million, 15 experiments
ugcccucaauggcucaguagccaguguagauccugucauuuguaaucaguAGCUACAUCUGGCUACUGGGUCUCugaugg
..((.(((..(((((((((((((((((((...(((...........)))...))))).))))))))))))))..))).))

Structure
ug  c   au              -     auc   ucau 
  cc uca  ggcucaguagccag uguag   cug    u
  || |||  |||||||||||||| |||||   |||    u
  gg agu  CUGGGUCAUCGGUC ACAUC   gac    g
--  u   CU              U     GAu   uaau 


Annotation confidence Not enough data
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Genome context
chrX: 45275613-45275692 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-222
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-222

Accession MIMAT0013942
Description Sus scrofa ssc-miR-222 mature miRNA
Sequence 51 - AGCUACAUCUGGCUACUGGGUCUC - 74
Evidence experimental
Illumina [1-3]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100