miRBase entry: ssc-mir-342

Stem-loop ssc-mir-342


Accession
MI0013153
Description
Sus scrofa ssc-mir-342 precursor miRNA
Gene family
MIPF0000190; mir-342

Literature search
2 open access papers mention ssc-mir-342
(9 sentences)

Sequence

80 reads, 68 reads per million, 14 experiments
aaggugagggugcuaucugugacugagggacauggcgcauagaacugUCUCACACAGAAAUCGCACCCGUCAccuuggcc
(((((((((((((..((((((.....((((((...(.....)...)))))).))))))....)))))).)))))))....

Structure
----       -      --ua      acuga      ugg g 
    aagguga gggugc    ucugug     gggaca   c c
    ||||||| ||||||    ||||||     ||||||   | a
    uuccACU CCCACG    AGACAC     CUCUgu   g u
ccgg       G      CUAA      ----A      caa a 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssc-miR-342

Accession MIMAT0013944
Description Sus scrofa ssc-miR-342 mature miRNA
Sequence 48 - UCUCACACAGAAAUCGCACCCGUCA - 72
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100