miRBase entry: ssc-mir-935

Stem-loop ssc-mir-935


Accession
MI0013156
Description
Sus scrofa ssc-mir-935 precursor miRNA
Gene family
MIPF0000606; mir-935

Literature search
2 open access papers mention ssc-mir-935
(2 sentences)

Sequence

ggcgcaggcggcaguggcgggagcggccccucggccauccuccgucugcCCAGUUACCGCUUCCGCUACCGCcgccgcuc
...((.((((((.(((((((((((((...((.(((............))).))...))))))))))))).))))))))..

Structure
ggc  a      a             ccc  c   caucc 
   gc ggcggc guggcgggagcgg   cu ggc     u
   || |||||| |||||||||||||   || |||      
   cg ccgcCG CAUCGCCUUCGCC   GA Ccg     c
-cu  -      C             AUU  C   ucugc 


Annotation confidence Not enough data
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Genome context
chr6: 53057502-53057581 [+]

Database links

Mature ssc-miR-935

Accession MIMAT0013947
Description Sus scrofa ssc-miR-935 mature miRNA
Sequence 50 - CCAGUUACCGCUUCCGCUACCGC - 72
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100